f|*.txt
Defined in file: brainvisa/types/builtin.py
00a. Talairach transform extraction
01. DICE calculation (Batch mode) : FFD vs median subsample of volume
01. Prepare grey and white maps for DARTEL
01. Sulcal imprints extraction
01. Sulci Label Translation
02. DARTEL Template Creation
02. Template building
02a. Sulci To Be Removed
02b. Sulci To Be Added
03. DARTEL Images Warping
03. Grid deformation
03. Sulci Merging
04. DARTEL Images Inverse Warping
04. Sulci Not to Be Pruned
04. Volume deformation
05. Sulci Weight
[Volume] Connected Component
[Volume] Segment brain from photo (mac)
Anatomist Show DISCO results in a common referential
Anatomist Show Sulcal Lines After HIP
Anatomist Show Sulcal Lines After HOP
Anatomist view Constellation colormap
Anatomy Normalization (using Baladin)
Apply multiple deformations
Average Sulcus Morphological Curves
B01. Bundles Label Translation
B02. Bundles To Be Removed
B03. Bundles Merging
B04. Bundles Not to Be Pruned
B05. Bundles Weight
Baladin Normalization to AIMS converter
Binary image: bounding box calculation
Brain Tracts Filtering
Brain Tracts Filtering - MRtrix
Brainvisa Show Text
Build a Model from a set of subjects
Build a Symmetric Model
Calcul DICE's score on masks/labels volume
Check Constellation Files
Choose best recognition
Cluster detection
Clustering From Reduced Group Matrix
Clustering From Reduced Individual Matrix
Color segmentation: class selection
Color segmentation: feature based classification
Color segmentation: feature based model learning
Color segmentation: model visualization
Combine Bundles
Compute pairwise distances for a given sulcus
Compute Pairwise mean distances
Compute stats data component
Constellation Cutter
Constellation Group Pipeline
Constellation Individual Clusters from atlas pipeline - FSL connectome
Constellation Individual Clusters from atlas pipeline - MRtrix
Constellation Individual Pipeline - Connectomist
Constellation Individual Pipeline - FSL connectome
Constellation Individual Pipeline - MRtrix
Constellation Individual Sub-Pipeline
Constraint Cleaner Left hemisphere
Constraint Cleaner Right hemisphere
Coordinate Grid Mesh
Coordinates From Hip Mapping
Coordinates From HipHop Mapping
Copy data between databases
Copy Referential
Cortical Surface Parcellation from HipHop
Create a new DISCO Study from existing parameters
Create an inter subject measures file
Create Cortical Constraints Texture
Create Cortical Thickness Texture
Create DISCO deformation field from subjectA to subjectB
Create DISCO+DARTEL deformation field from subjectA to subjectB
Create DISCO+DARTEL deformation field toward the common space
Create Left Hemisphere Cortical Constraints Texture
Create Mesh Median Surface
Create points ROI
Create Right Hemisphere Cortical Constraints Texture
Create Sulcus Label Volume
Create Surface-Based Statistical Parametric Maps
Dartel pipeline
Deformation DISCO Pipeline
Deformation DISCO+DARTEL Pipeline
Disco and Dartel complete pipeline
Disco pipeline
Elastix transformation estimation
EXPERIMENTAL: Compute template descaling transformation
Experimental: Transform multiple volumes into the common space
Extract list of values
Fiber number by region
Final deformation applied on graph
Final deformation applied on mesh
Final deformation applied on volume
Final deformation applied on voronoi and cortical ribbon
Freesurfer aparcstats2table
Freesurfer asegstats2table
FSL Connectome
GeneralImport
Generate optimization cartography workflow
GenerateROIAnalysisFiles
Get Functional Signals in Gyrus
Grey level replacement
GreyLevelConversionToActivity
Gyral Parcellation
Harmonic Intrinsic Parameterization (HIP)
Harmonic Intrinsic Parameterization (HIP) With Multiple Poles Path
Harmonic Intrinsic Parameterization right hemisphere
Harmonic Orthogonal Parameterization (HOP)
HESCHL Parcels Texture From Coordinates
HESCHL Sulcal Lines Extraction
Histology : 3d reconstruction pipeline
Histology: 3D reconstruction pipeline
Import FSL Connectomes.
Import volBrain results into a brainvisa database
ImportData
Individual clusters from atlas
Individual Regions Filtering
Leave-one-out RSS
Left Cortical Surface Parcellation
Mean Individual Profile From Smoothed Matrix
Mean Individual Profile Normalization
Measure the offset from SPM realign
Merge Labels From texture
ml - Factorial design
ml - Fast model generation and testing
ml - Features extraction using feature description file
ml - K Nearest neighbors cross-validation
ml - Logistic regression cross-validation
ml - Logistic regression cross-validation + Classes selection
ml - Multiclass AdaBoost image level cross-validation
ml - Parallel features extraction using feature description file
ml - Parallel multiple images features extraction
ml - Segmentation pipeline
ml - Support Vector Machines cross-validation
ml - Weighted Random Forest
ml - Weighted Random Forest image level cross-validation
ml - Weighted Random Forest image-level cross-validation pipeline
ml - Weighted Random Forest pipeline
ml - Weighting Random Forest (+ cross-validation)
New Referential
Normalize intensities of a collection of T1 MRIs
Normalize intensities of a T1 MRI
Pairwise Dice computation
Pairwise Distance computation Component
Parallel recognition
Parcels Texture From Coordinates
Parcels Texture From Coordinates PNH
patch assembling
Permutatations synthesis
Recognition Error
Reduced Individual Matrices From Group Regions
Reduced Individual Matrix From Filtered Reduced Profile
Remove Individual Constellation Files
Right Cortical Surface Parcellation
Single permutation
Smoothing of the Individual Matrix.
Sparse Individual Matrices and Profiles From Tracts.
Sparse Individual Matrices and Profiles From Tracts.
spm12 - Deformations : composition - generic
spm8 - VBM Segmentation
spm8 - VBM Segmentation - generic
Sulcal Lines Extraction
Sulcal Lines Extraction Left
Sulcal Lines Extraction Right
Sulcal Lines Extraction With Options
Sulcal Parcellation
Sulci Curvature Stats
Sulci SPAM
Sulci Voronoi
Sulcus Parameterization
Sulcus Parameterization 2015
Surfacic Sulci To Labels Volume
T-test
Transfer Sulci Labels
Transform fibre bundles between subjects
Transform fibre bundles into the common space
Transform graph between subjects
Transform graph into the common space
Transform mesh between subjects
Transform mesh into the common space
Transform volume between subjects
Transform volume into the common space
Validity Indexes
Verify accuracy of inverse deformations
View Bundles to be studied
View Sulci of all subjects before and after DISCO
View Sulci to be studied
VolumeROIAnalysis
Write a different measures in csv file
Write the connectome of a given parcellation
4D Volume
Any Type
baladin Transformation
Bundles Label Translation DISCO
Bundles To Be Studied DISCO
Constraint coordinates values
Coordinates File
Estimate T1 MRI raw volumes
Fiber weights
Graph Label Translation
Gyri To White Texture Translation
HipHop Model
Left Graph Label Translation
Log file
Nomenclature ROIs File
PET dynamic SPM realign results
Right Graph Label Translation
Save Subjects Hierarchy DARTEL
Save Subjects Hierarchy DISCO
Sulci Label Translation DISCO
Sulci Label Translation siGraph DISCO
Sulci To Be Studied DISCO
Sulci To White Texture Translation
Sulcus depth profile
Text file
Transformation